Plant MITE

SE1820008

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10336
Glycine max
SE1820008
Mutator
M5
Gm15:14017375-14017582
TATATTTTG
TGGGACAAAACTTAGATACAATTCTACAGGTGTTTTTTGGTGTTATTCTCCAATCAGAATTAGAGTTTCACCTCAGTAAT

Secondary structure and sequence

TSD TIR

5'

3'

TATATTT     C    C         A  C             T            C  TC      A         C  A     CGGCA    CACT       AA
       TGGGA AAAA TTAGATACA TT TACAGGTGTTTTT GGTGTTATTCTC AA  AGAATT GAGTTTCAC TC GTAAT     TTGT    TAATGGA  
       ||||| |||| ||||||||| || ||||||||||||| |||||||||||| ||  |||||| ||||||||| || |||||     ||||    |||||||   
       ATCCT TTTT AATCTATGT AA ATGTTCACGAAAA CCACGATAAGAG TT  TCTTAA CTCAAAGTG AG TATTA     AACA    ATTATTT  
GTTTTAT     A    -         C  A             -            A  TA      C         A  A     -----    ---C       CT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820008

TATATTTTGGGACAAAACTTAGATACAATTCTACAGGTGTTTTTTGGTGTTATTCTCCAATCAGAATTAGAGTTTCACCTCAGTAATCGGCATTGTCACTTAATGGAAATCTTTATTACACAAATTATAGAAGTGAAACTCCAATTCTATTTAGAGAATAGCACCAAAAGCACTTGTAAAACTGTATCTAATTTTATCCTATATTTTG

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