Plant MITE

SE1830009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10337
Glycine max
SE1830009
hAT
Hat3
Gm08:44218416-44218607
TGTATACC
TGTATACCTATGAAGCA

Secondary structure and sequence

TSD TIR

5'

3'

                          --  ACACGGACACCGGACACGACACGGACACGGACACGTGGATACCTGTAATGTCCAAAATATAGAACGTA
  TGTATACCTATGAAGCACCGACAC  CG                                                                    
  ||||||||||||||||||||||||  ||                                                                     
  ATATGTGGATACTTCGTGCCTGTG  GT                                                                    
AC                        AA  CGGGAAACGGCACAGGCCACAGGCTGTGCGCAGGCACAGTCACAGGCTGTGGCTGTGCTGTGGGCATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830009

TGTATACCTATGAAGCACCGACACCGACACGGACACCGGACACGACACGGACACGGACACGTGGATACCTGTAATGTCCAAAATATAGAACGTAATACGGGTGTCGTGTCGGTGTCGGACACTGACACGGACGCGTGTCGGACACCGGACACGGCAAAGGGCTGAAGTGTCCGTGCTTCATAGGTGTATACA

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