Plant MITE

SE1820010

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10338
Glycine max
SE1820010
Mutator
M2
Gm08:45020145-45020415
TATAATACA
TAATACAGAGCAAATTACAGCAAAATTCCGAGTTTTTTCAAATTACACA

Secondary structure and sequence

TSD TIR

5'

3'

TA     CA   C            A     ---GA       CA         TAACCC   - --       TTTTCC    CTA        ---------------------TAA   TGAAAACATTACACTAACCCTCCTTATA
  TAATA  GAG AAATTACAGCAA ATTCC     GTTTTTT  AATTACACA      CAC C  CTTTTTA      TACA   ACCTCCTT                        GTT                            
  |||||  ||| |||||||||||| |||||     |||||||  |||||||||      ||| |  |||||||      ||||   ||||||||                        |||                             
  ATTAT  CTC TTTAATGTCGTT TGGGG     CAAAGAA  TTAATGTGT      GTG G  GAAAAAT      ATGT   TGGAGGGA                        ACT                            
AC     AA   A            G     GATTC       CA         --TCGT   A AT       TTGATA    AAG        TCATCCTCTACAATCACATTCTAA   ACCTCACAGTCATATTACAAAAGTTTGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820010

TATAATACAGAGCAAATTACAGCAAAATTCCGAGTTTTTTCAAATTACACATAACCCCACCCTTTTTATTTTCCTACACTAACCTCCTTTAAGTTTGAAAACATTACACTAACCCTCCTTATATGTTTGAAAACATTATACTGACACTCCATCAAATCTTACACTAACATCTCCTACTAGGGAGGTGAATGTAATAGTTTAAAAAGTAGAGTGTGCTTGTGTAATTACAAGAAACCTTAGGGGGTGTTGCTGTAATTTACTCAATATTACA

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