SE1820012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10340
  • Glycine max
  • SE1820012
  • Mutator
  • M6
  • Gm08:798381-798879
  • AAAATTATA
  • GGCAAAATTGCATTTTTAGTCTCCCTAGTTGTCTCCAATTTCAATTTTGGTTCCCCTTCAAAATTATTGATACATTTAGTCCTCCAATTATGTTCAATCCCGCAAATGTGGTCCCCAATTTCAGATTTAGACGTTGACTGTTACAAAGAAATGTTGATTAACACTTGTCACATTCTGATTGAATGATGATTGTCGCGTGTCACGTTCTGATTGGACGTTGAT

Secondary structure and sequence

TSD    TIR
5'



3'
AAAATTATA                 A                                   C    C            A                      C       C               T                        C    A          --------AA   T         C  ATT A        T                        C      AACAACAATACATT
         GGCAAAATTGCATTTTT GTCTCCCTAGTTGTCTCCAATTTCAATTTTGGTTC CCTT AAAATTATTGAT CATTTAGTCCTCCAATTATGTT AATCCCG AAATGTGGTCCCCAA TTCAGATTTAGACGTTGACTGTTA AAAG AATGTTGATT          CAC TGTCACATT TG   G ATGATGAT GTCGCGTGTCACGTTCTGATTGGA GTTGAT              
         ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||          ||| ||||||||| ||   | |||||||| |||||||||||||||||||||||| ||||||              T
         CCGTTTTAACGTAAAAA CAGGGGGATCAATAGAGGTTAAAGTTAAAACCAGG GGAA TTTTAATAACTA GTAAATTAGGAGGTTAATACAA TTAGGGT TTTACACCAGGGGTT AAGTCTAAATCTGCAACTGATAAT TTTC TTACAACTGA          GTG ACAGTGTAA AC   C TGCTACTG TAGTGCACAGTGCAAGACTAACCT CAATTG              
ATATTAAAA                 C                                   A    A            C                      A       A               T                        A    C          CGGTCAGACA   T         T  CAC C        C                        A      AGATACCTCCTACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End