Plant MITE

SE1820013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10341
Glycine max
SE1820013
Mutator
M1
Gm02:10800588-10800890
TTTGGAAAC
TTTGGAAACGAGTGTTGCTAGGTGCACCCAACATTATTGCTGGTACATCCATCATTATTTGAAAATGGCA

Secondary structure and sequence

TSD TIR

5'

3'

     G   AC                     A             A  T   T     --TT      T    ---------      CCCTTATTAATTTCTCCCCTTACGGATCAAGTTGATCCATAAGTCTTAAAAATAAACTTACGGATCAACTT
  TTT GAA  GAGTGTTGCTAGGTGCACCCA CATTATTGCTGGT CA CCA CATTA    TGAAAA GGCA         AAATTA                                                                       
  ||| |||  ||||||||||||||||||||| ||||||||||||| || ||| |||||    |||||| ||||         ||||||                                                                        
  AAG TTT  CTCACGACGATCCACGTGGGT GTAATAACGACCA GT GGT GTGAT    ATTTTT CTGT         GGAATG                                                                       
CA   G   --                     C             C  -   C     TGGT      -    CTTTTATAA      CCTAGTTCAACTAGGCATTCAATTAAAAATTCTGAATGCCTAGTTCAACTAGGCATTTAGAAAATGCCTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820013

TTTGGAAACGAGTGTTGCTAGGTGCACCCAACATTATTGCTGGTACATCCATCATTATTTGAAAATGGCAAAATTACCCTTATTAATTTCTCCCCTTACGGATCAAGTTGATCCATAAGTCTTAAAAATAAACTTACGGATCAACTTGATCCGTAAAAGATTTACGGATCAACTTGATCCGTAAGTCTTAAAAATTAACTTACGGATCAACTTGATCCGTAAGGAATATTTTCTGTCTTTTTATGGTTAGTGCTGGTGCACCAGCAATAATGCTGGGTGCACCTAGCAGCACTCTTTGGAAAC

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