Plant MITE

SE1850020

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10348
Glycine max
SE1850020
PIF/harbinger
To1
Gm16:25069936-25070196
TAA
AGGCTTTGGATAAACTTCTTTATAAACACTTACAGAAGAAGAAAATAAGAAGGAAAAATGAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TA     ----       AAC          A      C              A  A       T     AAGCTTCACC            A     T         CAC   A                     T
  AGGCT    TTGGATA   TTCTTTATAA CACTTA AGAAGAAGAAAATA GA GGAAAAA GAAAT          CATAAGTTAAAA TAGCT CTGCATAAG   AAA CAGCTTTTTGGAGAAGCTAAA 
  |||||    |||||||   |||||||||| |||||| |||||||||||||| || ||||||| |||||          |||||||||||| ||||| |||||||||   ||| ||||||||||||||||||||| C
  TCCGG    AACCTAT   AAGAGGTATT GTGAAT TCTTCTTCTTTTAT CT CCTTTTT CTTTA          GTATTCAATTTT ATCGA GATGTATTC   TTT GTCGAAAAACCTCTTCGATTT 
AA     AACG       ACA          C      A              C  C       C     ----------            C     T         AAT   A                     A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1850020

TAAGGCTTTGGATAAACTTCTTTATAAACACTTACAGAAGAAGAAAATAAGAAGGAAAAATGAAATAAGCTTCACCCATAAGTTAAAAATAGCTTCTGCATAAGCACAAAACAGCTTTTTGGAGAAGCTAAATCATTTAGCTTCTCCAAAAAGCTGATTTTAACTTATGTAGTAGCTACTTTTAACTTATGATTTCCTTTTTCCCTCCTATTTTCTTCTTCTATAAGTGCTTATGGAGAAACATATCCAAGCAAGGCCTAA

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