SE1820021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10349
  • Glycine max
  • SE1820021
  • Mutator
  • M8
  • Gm03:34152539-34152799
  • TTACTTTTA
  • AGGCTTAATTACTAATTTTGGTCCCTAAATTATTTAAAAGAGCTCAATTTGGTCCCTAATTTTCTAAACGCTTCAATTGGTCATTTC

Secondary structure and sequence

TSD    TIR
5'



3'
TTACTTTT                  T     C      A      AGA    -    T     -        CT   -C          -   A    ------------------CC    ATTGAATTTGACACGGTTAA
        AGGCTTAATTACTAATTT GGTCC TAAATT TTTAAA   GCTC AATT GGTCC CTAATTTT  AAA  GCTTCAATTG GTC TTTC                    TCAA                    
        |||||||||||||||||| ||||| |||||| ||||||   |||| |||| ||||| ||||||||  |||  |||||||||| ||| ||||                    ||||                    T
        TCCGAATTAATGATTAAA TCAGG ATTTAA AGGTTT   CGAG TTAG CCAGG GATTAAAA  TTT  CGAAGTTAGT CAG AAAG                    GTGA                    
ATTTTCAT                  -     A      -      --G    G    T     A        AT   TA          T   G    ACAATTTAAGACTTCCAAAA    ATGGTTATCACTGCCAAAAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End