SE1820024

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10352
  • Glycine max
  • SE1820024
  • Mutator
  • M11
  • Gm08:20061322-20061779
  • TCATATCAT
  • ATGGGGAATTTGACCAATATAGGTATTTTTTTAAATTAAATACCACTTTGGAGTAGTCTTCAAACAATTTACTAGACTAAGTGATTCCTGCCACATCGAAAATTGGTGGCGCCAATCAACTCAGCTCCACCTGGTAGTGCCACTCTGAAGAGTGTCACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TCATATC    -                    --A       --A                  A  A                       AA T   TC   C   ATC A            C  A      C        C    A   C                   CAAT   ACACGTTTTTTAATCAAATGCAGTCTTCCATGCACGTTTGACCAAGTGACTTGGAAA
       ATGG GGAATTTGACCAATATAGGT   TTTTTTT   AATTAAATACCACTTTGG GT GTCTTCAAACAATTTACTAGACT  G GAT  CTG CAC   G AAATTGGTGGCG CA TCAACT AGCTCCAC TGGT GTG CACTCTGAAGAGTGTCACC    CAA                                                         
       |||| ||||||||||||||||||||   |||||||   |||||||||||||||||| || |||||||||||||||||||||||  | |||  ||| |||   | |||||||||||| || |||||| |||||||| |||| ||| |||||||||||||||||||    |||                                                          
       TACT CCTTAAACTGGTTATATCCA   AAAAAAA   TTGATTTATGGTGAAACC CA CAGAAGTTTGTTAAATGGTTTGA  C CTA  GAC GTG   C TTTAACCACCGT GT AGTTGA TCGAGGTG ACTA CAC GTGAGATTTCTCACAGTGG    AGT                                                         
 GTACTA    T                    AAA       AAA                  C  C                       -- -   --   A   CAT C            A  C      A        A    C   A                   -TCA   TCACACACTTACTGAACCACCGCGGTGTGACCCACCGAAGTGGGTCAGTTTGTGCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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