SE1820026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10354
  • Glycine max
  • SE1820026
  • Mutator
  • M6
  • Gm05:21758314-21758803
  • TAAATTTTA
  • TAAATTTTAGGCAAATGCATTTTTGGTCCCCCCTAGTTGTCTCCAATTTCGATTTTGGTCCCCCTTTAAAATTATTAACGCATTTAGTCCTCCAATTATGTTCAATCTCGTAAATGTGGTCTCCAAGTCCAGATTTAGACATTGACTGGTACAAAGGAATATTGACTGACACGTGTCACATTCTGATTGGATGATGACTGTCATGTGTCATATTCTGATTGGATGTTGAC

Secondary structure and sequence

TSD    TIR
5'



3'
    T          --                CC         CC     C           CC             A                                                     A        CA       G           A      GA  C          C                            A                  AACAACAATACATT
TAAA TTTAGGCAAA  TGCATTTTTGGTCCCC  TAGTTGTCT  AATTT GATTTTGGTCC  CTTTAAAATTATT ACGCATTTAGTCCTCCAATTATGTTCAATCTCGTAAATGTGGTCTCCAAGTCC GATTTAGA  TTGACTG TACAAAGGAAT TTGACT  CA GTGTCACATT TGATTGGATGATGACTGTCATGTGTCAT TTCTGATTGGATGTTGAC              
|||| ||||||||||  ||||||||||||||||  |||||||||  ||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||| ||||||  || |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||              T
ATTT AAATCCGTTT  ATGTAAAAACCAGGGG  ATCAACAGA  TTAAA CTAAAACCAGG  GAAATTTTAATAA TGTGTAAATCAGGAGGTTAATACAAGTTAGGGCATTTATACCAGGGGTTCAGG TTAAATCT  GATTGAT ATGTTTCCTTA GACTGA  GT CACAGTGTAA ACTAACCTGCTACTGACGGTGTACAGTA AAGACTAACCTACAACTG              
    T          TA                -A         AA     A           AA             C                                                     A        AC       A           C      AG  A          C                            C                  AGATACCTGCTACT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End