SE1810028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10356
  • Glycine max
  • SE1810028
  • Tc1/Mariner
  • St3
  • Gm12:33515205-33515880
  • TA
  • TACTCCCTCCGTTTCAAAATACATGTCCATTTTTGAGAAATTGCGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                   -       -GCG  AACC         C --  TT GACACAAAAGTTCCTATTTTACCCTTGTCCTTTATTTTCTCCATTTTATATTTATTTATCCCACCTCATAATTACTCCCAATACCAAAATTAATTAAAGTTAATCAAATTACAATACCAATACATACTGGCAATACCAATACTACTAAATGGCATTATTTTTGCTTCGGTATTGAAAAGCTCAATTGACATAGTTTGGTTATCAAAGTTTTTTAAAACTCAATTGAAAAAACTTCCCTCCATTATTAATTATACTCTAATCTTAAAATGTTT
TACTCCCTCCGTTTCAAAATACATGTCCATTTTTG AGAAATT    GT    AAGGACAGG T  AA  T                                                                                                                                                                                                                                                                                
||||||||||||||||||||||||||||||||||| |||||||    ||    ||||||||| |  ||  |                                                                                                                                                                                                                                                                                 
ATGAGGGAGGCAAAGTTTTATGTATAGGTAAAAAC TCTTTAA    CA    AGTTTTATG T  AG  G                                                                                                                                                                                                                                                                                
                                   C       AAAA  ---A         - AC  -- TAAACTATCAAATTCCTACGTAAAACTGATAAAACGGGAACGGATGATTAATACATCAAGAACTAAATTTAGTTTGTTACCGAGAAGTAAATTTAGTTTGTTACCAAGAAGTAAATTTAGTTTACCTTTTCGTAACTCTAGGTATCGTTTTAAAACAAGAAGTAATTATTATATTTAAACTATTTACTCATGGATTGAGAATATATATGACTTTAATATTCACAAAAACTTTTTTACCACCCTTTATGTTTAAAATTAAATTGAAACCACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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