SE1820030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10358
  • Glycine max
  • SE1820030
  • Mutator
  • M13
  • Gm01:42173413-42173892
  • AATAGAATA
  • GGCAAAATTGCAAATTTAGTCCCCCTATTTATCT

Secondary structure and sequence

TSD    TIR
5'



3'
AATAGAATA          C      A            A   CAAAATTT  T    A  C                            C                C              C C     AA                    A     T  C                                    C AC           AT         G     CATTAATTAG
         GGCAAAATTG AAATTT GTCCCCCTATTT TCT        AA TTTG TC TCCTATAATTTAATTTATGAATTTAGTC CCCAATTTTTTGCAAT CTATTATTTCAGTC C AATCC  AAATTGGATGTTGATTGTTA TTGCT AC TTGACCGTCACGTGTCGCGCTTTTATTGGATGTTGA C  CACGTGTTGCG  TTTATTGGA GTTGA          
         |||||||||| |||||| |||||||||||| |||        || |||| || |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | |||||  |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |  |||||||||||  ||||||||| |||||           
         CCGTTTTAAT TTTAAA CAGGGGGATAAA AGA        TT AAAC AG GGGATATTAAATTAGGTGCTTAAATCAG GGGTTAAAAAATGTTA GGTAATAAAGTCAG G TTAGG  TTTAACTTGCAACTGATAAT AACGG TG AACTGGCAGTGTACAGTGTGAAAATAATCTACAACT G  GTGTACAGCGT  AAATAACCT CAATT          
ATAAGATAA          A      C            C   ACTTAACT  T    C  T                            C                A              A A     GC                    G     T  C                                    A CA           GC         G     AAAACACATG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End