SE1820032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10360
  • Glycine max
  • SE1820032
  • Mutator
  • M13
  • Gm17:7498180-7498654
  • TAAAATTAA
  • AGACAAAATTGTAAATTTAGTCCCCCTATTTGTTTCAGAATTCGATTTTGGTCCTCTTATAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAATTA  AC              A    C                                        TAATTC  A            -AA          -  -A            AC     CA            -   T    C    CA  G    CC     A   C                    TCG     C  -  CACG         CACCAATTT   GCACC
        AG  AAAATTGTAAATTT GTCC CCTATTTGTTTCAGAATTCGATTTTGGTCCTCTTATAATT      AC AATTTAGTTTCC   TTTTTTGCAA CC  TTATTTTAGTTC  AATCC  AAATTAGACGTT GAC GTTA TTGT  AC TTGA  GTCAC TGT GTGCTTTTATTGGACATTGA   TCACG GT GG    TTTATTGGA         CGT     
        ||  |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||      || ||||||||||||   |||||||||| ||  ||||||||||||  |||||  |||||||||||| ||| |||| ||||  || ||||  ||||| ||| ||||||||||||||||||||   ||||| || ||    |||||||||         |||     T
        TC  TTTTAATATTTAAA CAGG GGATAAACAGAGTCTTAAGCTAAAACCGGGGGGATATTAA      TG TTAAATCAGAGG   GAAAAACGTT GG  AATAAAGTCAGG  TTGGG  TTTAATCTGCAA CTG CAAT AACG  TG AACT  CAGTG ACA CACGAAAATAACTTGTAACT   AGTGC CA CC    AAATAATCT         GCA     
AATTAAAA  CA              C    A                                        -TAAAA  C            GTC          A  GC            GA     AC            A   C    T    AA  G    AA     C   A                    ---     A  G  ACTA         ---CCCACT   ATTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End