SE1820034

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10362
  • Glycine max
  • SE1820034
  • Mutator
  • M7
  • Gm18:8919036-8919525
  • TTTCTTTTT
  • GGCAAAATTGCATTTTTGGTCCCCCAGTTTATCTCTAGTTTTGGATTTGGTTCCTTAGTAATTTAATTCACGAATTGGGTCCTCTTATTTTGTAAAATCGTGCAATGTTGGTCCCACAGGTCACAATTGGACGTTAACCGTTAGCAAGTGACGTTGACTGCCACATGTCATGTTCTTATTGGATGATGACTGTCACGTGTCATGTTGTGATTG

Secondary structure and sequence

TSD    TIR
5'



3'
TTTCTTTTT          C TT       C  C                           C           A     C                               C            A A                 A       GC   T  -C     C  C   A                            CAC          G      AATG   ACTCCATGAAAGATGA
         GGCAAAATTG A  TTTGGTC CC AGTTTATCTCTAGTTTTGGATTTGGTT CTTAGTAATTT ATTCA GAATTGGGTCCTCTTATTTTGTAAAATCGTG AATGTTGGTCCC C GGTCACAATTGGACGTT ACCGTTA  AAG GA  GTTGA TG CAC TGTCATGTTCTTATTGGATGATGACTGT   GTGTCATGTT TGATTG    TCA                
         |||||||||| |  ||||||| || ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |||||||  ||| ||  ||||| || ||| ||||||||||||||||||||||||||||   |||||||||| ||||||    |||                A
         CCGTTTTAAC T  AAACCAG GG TTAAATAGAGGTCAAAGCCTAAACCAG GGATCATTAAA TAAGT CTTAACCCAGGAGGATAAAATATTTTAGCAC TTACAACCAGGG G CCGGTGTTAACCTGCAA TGGCAAT  TTC CT  CAACT AC GTG ACAGTGCAAGAATAACCTACTACTGACA   CACAGTACAA ACTAAC    TTA                
TTTTTCTTT          A TT       A  A                           A           C     A                               A            A C                 C       GT   -  TA     A  A   C                            ATA          A      -AAG   CTTTTGTTGTTACGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End