Plant MITE

SE1860038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10366
Glycine max
SE1860038
Micron
Mim1
Gm05:35903676-35903880
ATAATAT
TATATAGTGGGAGAGGATCCACTTACTCCAAGAGTAACTCTCCTCATCCTCATCATTCATTTTCTTGAAATCTAATGGTTAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

ATAA      G      A    C                     ------------                            A           AA   TAGT
    TATATA TGGGAG GGAT CACTTACTCCAAGAGTAACTC            TCCTCATCCTCATCATTCATTTTCTTGA ATCTAATGGTT  AAT    
    |||||| |||||| |||| |||||||||||||||||||||            |||||||||||||||||||||||||||| |||||||||||  |||    T
    ATATAT ACCCTC CCTA GTGAATGAGGTTCTCATTGAG            AGGAGTAGGAGTGGTAAGTAAAAGAATT TAGATTACCAA  TTA    
 ATA      -      C    A                     AAAATCTCAATA                            C           CA   TTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1860038

ATAATATATAGTGGGAGAGGATCCACTTACTCCAAGAGTAACTCTCCTCATCCTCATCATTCATTTTCTTGAAATCTAATGGTTAAAATTAGTTACTTATTACAACCATTAGATCTTAAGAAAATGAATGGTGAGGATGAGGAATAACTCTAAAAGAGTTACTCTTGGAGTAAGTGAATCCCCTCCCATATATAATA

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