SE1850041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10369
  • Glycine max
  • SE1850041
  • PIF/harbinger
  • To5
  • Gm10:40037914-40038320
  • TTA
  • AGGGTGTGTTTGGTTTGCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    T            C   TTCATTTTCT       TTTCC  TTTTCATTTTCTAAAAACTGTTTTCATTTTCAAAAGATTAGAATTCTGAAAACATGTTTGGTTTGACTTCTTGTTTTCTGTTTTCAAGAAATAAAAACACTGAAAATGCGTTTTCAAAAGGAAATGTATTTTTAGATTTGCTTAAAGTTACATTCCTTGCC
  AGGG GTGTTTGGTTTG ATT          GTTTTTA     TG                                                                                                                                                                 
  |||| |||||||||||| |||          |||||||     ||                                                                                                                                                                 A
  TCCC CACAAACCAAAC TAA          ACAAAAG     TA                                                                                                                                                                 
AT    C            -   ----CAAAAA       -----  AAAGTGACCTCTATCTTTTACTACTACCTTTACACAAACCAACCTAAAGACAAAAGTAAAAGTCATTTTTATAAAAGGGTTTGCTTGGTTTTTGACCTTTGTTATTTTAGAGCAAAAGTCAACTTTGGTCCTTGGAGTAAAACCCATTTTACTTATGCGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3