Plant MITE

SE1830044

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10372
Glycine max
SE1830044
hAT
Hat6
Gm02:31233710-31234327
ATCTCATC
CAAGGTTATCAAACT

Secondary structure and sequence

TSD TIR

5'

3'

ATCTCATC  A            ---CGA         CA  C    ----   AGTTTCATAGACTCGACTCGTAGATTCAACTCGTAGACTCGTAAAAGTCTACTTTATATAAAAATAATAACAAAATATATATAAATAACATACTAATTAAACATTTCAACAATATAATAAAGCAAAAAAGTAAATTATAAAGTTCAGAATATTTAAATAACCAAGTCTTGTAATAATACATCACAACTAAACAATAACTTGTAGAGGTTATAGTAGTGGTAGATCATTCTCATCGAGGGTTTGATGTTATTAGAGAACAA
        CA GGTTATCAAACT      GAGTTTACG  GA TCGT    GAA                                                                                                                                                                                                                                                                    
        || ||||||||||||      |||||||||  || ||||    |||                                                                                                                                                                                                                                                                     
        GT CCAATAGTTTGA      AATTGAGTG  AT TGAG    CTC                                                                                                                                                                                                                                                                    
CTACTCTA  A            AAGTTC         --  -    AATG   AAATGCTCAGGTGAACAGGAGACACTCAACTGAGAACTTATTTGAGAAAAAATCATCTGAGACCCATTTGAGATATTTGAGATTCATTTGTGCCATCTGAGAGCTCAAATGGTGGCTCAGTTGCTCAATCATTCAATTTTTTTTAATCTGGTTTTACATTCAGTAAAAAATAACAAAAAATAAACAAATCGTAAGTTGTATGGAAGTAAATCGCACAATAAGAGTTTATGTTTTAAGAGTGGAAATTATTATATTTTGGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830044

ATCTCATCCAAGGTTATCAAACTCGAGAGTTTACGCAGACTCGTGAAAGTTTCATAGACTCGACTCGTAGATTCAACTCGTAGACTCGTAAAAGTCTACTTTATATAAAAATAATAACAAAATATATATAAATAACATACTAATTAAACATTTCAACAATATAATAAAGCAAAAAAGTAAATTATAAAGTTCAGAATATTTAAATAACCAAGTCTTGTAATAATACATCACAACTAAACAATAACTTGTAGAGGTTATAGTAGTGGTAGATCATTCTCATCGAGGGTTTGATGTTATTAGAGAACAAGGGTTTTATATTATTAAAGGTGAGAATTTTGTATTTGAGAATAACACGCTAAATGAAGGTATGTTGAATGCTAAACAAATAAAAAACAATAAAAAATGACTTACATTTTGGTCTAATTTTTTTTAACTTACTAACTCGTTGACTCGGTGGTAAACTCGAGAGTCTACCGTGTTTACTTAGAGTTTATAGAGTTTACCCAGAGTCTACTAAAAAAGAGTTTATTCAAGAGTCAACTCACAGAGGACAAGTGGACTCGTAAACTCGTAAGAGTTAGTGAGTTAACTTGAAAGTTTGATAACCATGATCTCATC

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