Plant MITE

SE1820049

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10377
Glycine max
SE1820049
Mutator
M10
Gm13:6129940-6130213
AAAGGAACA
GGGACATGCTAGGTGCACCCAACAACATTACTGGTGTACCCAGCAATTAGGTGAATGGACAAAATTGTCCTTGTGTTAAAAAAATAATTTCTTCTTCCAGAAGAATGTTCTTCCGGTAGAATAAATTGTTCATCCGGAAGAAGATTCTTCCGGAAGAAGAAATTATTTTTTTTAACACAAGGGCAATTTTGCCCATTCACCTAATTGCTGGGTGCACCAACAATGTTGCTGGGTGCACCTAGCATGTCCC

Secondary structure and sequence

TSD TIR

5'

3'

AAAGGAACAATTTCAA                     A       AC                           A                         -              A       G         TA     A
                GGGACATGCTAGGTGCACCCA CAACATT  TGGTGTACCCAGCAATTAGGTGAATGG CAAAATTGTCCTTGTGTTAAAAAAA TAATTTCTTCTTCC GAAGAAT TTCTTCCGG  GAATA 
                ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||  ||||| A
                CCCTGTACGATCCACGTGGGT GTTGTAA  ACCACGTGGGTCGTTAATCCACTTACC GTTTTAACGGGAACACAATTTTTTT ATTAAAGAAGAAGG CTTCTTA AAGAAGGCC  CTTGT 
        TTAAGCAA                     C       CA                           C                         T              C       G         TA     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820049

AAAGGAACAATTTCAAGGGACATGCTAGGTGCACCCAACAACATTACTGGTGTACCCAGCAATTAGGTGAATGGACAAAATTGTCCTTGTGTTAAAAAAATAATTTCTTCTTCCAGAAGAATGTTCTTCCGGTAGAATAAATTGTTCATCCGGAAGAAGATTCTTCCGGAAGAAGAAATTATTTTTTTTAACACAAGGGCAATTTTGCCCATTCACCTAATTGCTGGGTGCACCAACAATGTTGCTGGGTGCACCTAGCATGTCCCAACGAATT

Copy Cancel