SE1810050

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10378
  • Glycine max
  • SE1810050
  • Tc1/Mariner
  • St3
  • Gm12:11908888-11909374
  • TA
  • TACTCCCTCCGTTTCAAAATACATGTCCATTTTTGAGAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                 T        -------    TAACC      --   CTAATTTGACACAAAAGTTCCTATTTTACCCTTGTCCTTTATTTTCTCCATTTTATATTTATTTATCCCACCTCATAATTACTCCCAATACCAAAATTAATTAAAGTTAATCAAATTACAATACCAATACATACGGGCAATACCAATACTACTAAATGGCATTATTTTTGCTTCGGTATTG
TACTCCCTCCGTTTCAAAATACATGTCCATTTT GAGAAATT       GTGG     AAGGAC  AGG                                                                                                                                                                                     
||||||||||||||||||||||||||||||||| ||||||||       ||||     ||||||  |||                                                                                                                                                                                     A
ATGAGGGAGGCAAAGTTTTATGTACGGGTAAAA CTCTTTAA       AGTT     TTATGT  AGG                                                                                                                                                                                     
                                 C        AAAACAA    -----      AC   TAAACTATCAAATTCCTACGTAAAACTGATAAAAAGGGAACGGATGATTAATTAACCTAAGATCAAAAAACAGGTGTTATTAATTAAGGGTAATTCTAATCTCATATTAATTATTACCTCCCTTCAAAAAAGTTAACTCAAAATTTTTTGAAACTATTGGCTTGATACGGTTAACTAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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