SE1820051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10379
  • Glycine max
  • SE1820051
  • Mutator
  • M1
  • Gm15:5421271-5421642
  • TTTTGTACT
  • GTACTGGGTGTTGCTAGGTGCACCCAGCATTATTGCTGGTGCACCCAGTACTTAAGGTAAAATGACGAAAATACCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTT    ---T        C                                    C    GG       A G     -A    -    CCGTAAGCCTTTTACGGATCAACATGATCCGTAAGCTTTTTACAGATCAACTTGATCCATAAGATTTTTACGGATCATGTTGATCCGTATTGTTTCGTAAA
    GTAC    GGGTGTTG TAGGTGCACCCAGCATTATTGCTGGTGCACCCAGTA TTAA  TAAAATG C AAAAT  CCCT TGAT                                                                                                     
    ||||    |||||||| |||||||||||||||||||||||||||||||||||| ||||  ||||||| | |||||  |||| ||||                                                                                                      
    CATG    CTCACAAC ATCCACGTGGGTCGTAATAACGACCACGTGGGTCGT AATT  ATTTTAT G TTTTA  GGGG TGCG                                                                                                     
   T    TTTT        A                                    A    -A       - G     AC    A    AAAAAAGCGTAAACACTACCCACACACACTCCCACTAGGCATTTAGCATGCCTAGTTCAACTAGGCATTCTAACTATGCCTAGTTGAACTAGACATTCGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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