Plant MITE

SE1850052

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10380
Glycine max
SE1850052
PIF/harbinger
To6
Gm07:44516485-44516742
ATA
GGGCCTGTTTAGATACACCTCTCCAAAAGCATTTTTAGGAGAGGAAAATAAAAAGAAAAAATGAAATTAGTTTCTCAAAGCTAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

ATA   CC     A    C  C  T CAA   C     T             AAA   A           T     C  --A          TATTTCA    T   TTAAAAATCATCTTTTAGAAAAACTGA
   GGG  TGTTT GATA AC TC C   AAG ATTTT AGGAGAGGAAAAT   AAG AAAAATGAAAT AGTTT TC   AAGCTAAAAT       TGCA AAG                           
   |||  ||||| |||| || || |   ||| ||||| |||||||||||||   ||| ||||||||||| ||||| ||   ||||||||||       |||| |||                            
   CCC  ACAAA CTAT TG AG G   TTC TAAAG TTCTCTTCTTTTA   TTC TTTTTACTTTA TCAAA AG   TTCGATTTTA       ATCG AAT                           
ATA   AA     C    T  A  T CTC   C     C             ATC   C           C     A  ATA          -------    -   ATGGATTTGATTAAACGTCTTCGATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1850052

ATAGGGCCTGTTTAGATACACCTCTCCAAAAGCATTTTTAGGAGAGGAAAATAAAAAGAAAAAATGAAATTAGTTTCTCAAAGCTAAAATTATTTCATGCATAAGTTAAAAATCATCTTTTAGAAAAACTGAGATAGCTTCTGCAAATTAGTTTAGGTATAAGCTAATTTTAGCTTATAGAAAAACTCATTTCATTTTTCCTTCTAATTTTCTTCTCTTCGAAATCCTTCTCGTGAAGTTTATCCAAACAAACCCATA

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