SE1850053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10381
  • Glycine max
  • SE1850053
  • PIF/harbinger
  • To7
  • Gm07:582828-583089
  • TTA
  • AGGCTCTGTTTTAATAAACTACTCAATAAGCACTTTAGAAGAAAATAAGAAGGTAAAATGAATTAATCTTCTTCTCATAAGTTAAAATTAGCTTATACATAAGTTAATTTATGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT           TA  A    A           -CTT   ---A        A  A               T   C       A                 A          TT  ------    CGTTCTCTC
  AGGCTCTGTTT  AT AACT CTCAATAAGCA    TAG    AGAAAATA GA GGTAAAATGAATTAA CTT TTCTCAT AGTTAAAATTAGCTTAT CATAAGTTAA  TA      TGGA         
  |||||||||||  || |||| |||||||||||    |||    |||||||| || ||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||  ||      ||||         A
  TCCGGGACAAA  TA TTGA GAGTTGTTCGT    ATC    TCTTTTAT CT CCATTTTGTTTAATT GAA AAGGGTA TCAATTTTAATCGAATA GTATTCAATT  AT      ACCT         
AT           TC  A    A           AAAT   CTCC        A  A               C   -       A                 C          TT  TCGAAA    CTCCACTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End