Plant MITE

SE1820054

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10382
Glycine max
SE1820054
Mutator
M1
Gm02:7703774-7704076
TTGGTTAAC
GTTAACGAGTGTTGCTAGGTGCACCTAGCATTATTGCTGGTGCATCCAGCATTCTTTGAAAATGACA

Secondary structure and sequence

TSD TIR

5'

3'

TTG      ---                              C        C       --  T      T    -AAACT  TCCTGCTAATTTCTCCCTTTACGGATCAAGTTGATCCGTAAGTTGATTTTTAAGACTTACGGATCAAGTTGAT
   GTTAAC   GAGTGTTGCTAGGTGCACCTAGCATTATTG TGGTGCAT CAGCATT  CT TGAAAA GACA      GT                                                                         
   ||||||   |||||||||||||||||||||||||||||| |||||||| |||||||  || |||||| ||||      ||                                                                         C
   CAATTG   CTCACGATGATCCACGTGGGTCGTAATAAC ACCACGTG GTCGTGA  GG ACTTTT CTGT      GG                                                                         
         GTT                              A        A       TT  T      -    CTTTAT  GGAATGCCTAGTTCAAATAAGCATTCAATTAAAAATTCTGAATGTCTAGTTGAACTAGGCATTCAAAAAATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820054

TTGGTTAACGAGTGTTGCTAGGTGCACCTAGCATTATTGCTGGTGCATCCAGCATTCTTTGAAAATGACAAAACTGTTCCTGCTAATTTCTCCCTTTACGGATCAAGTTGATCCGTAAGTTGATTTTTAAGACTTACGGATCAAGTTGATCTGTAAAAAACTTACGGATCAAGTTGATCTGTAAGTCTTAAAAATTAACTTACGAATAAACTTGATCCGTAAGGGGTATTTCTGTCTTTTCATGGTTAGTGCTGAGTGCACCAACAATAATGCTGGGTGCACCTAGTAGCACTCTTGGTTAAC

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