Plant MITE

SE1850058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10386
Glycine max
SE1850058
PIF/harbinger
To3
Gm04:36427343-36428099
TAA
AGAGTGCGTTTGGATAGAG

Secondary structure and sequence

TSD TIR

5'

3'

TA      C        A   AATTTTA   GAGGAAAGTAATTTATCAAAGAATTTAAATTTTTGTAATCTAAAATTCATTGTTTGGATTTTTTTATGAAGAATTTAAATTTTTGGAATTTTAAAACAAAATTTTAAGCAACTAAAAATGTGAAATTTCAATTTCCTTCTAAAAGGTGAGAAATTGAAATTCTCTTCTTGATAGAAGAATCTTCTAAAATGTTTGTGCATTTCCTTTATAACCTTCATCTTTTCTTTCACCTGAAAGTTTCCGAAATCTCGTTCTCGAATTTGCGACTCTTCTCTCACGCTGATGATCCTCTTCTTCCAGAAACACCGTCTGAGCTCGTGGAACATCGACTGTGTGTGGGCGTAGGGGGA
  AGAGTG GTTTGGAT GAG       ACT                                                                                                                                                                                                                                                                                                                                                              
  |||||| |||||||| |||       |||                                                                                                                                                                                                                                                                                                                                                               
  TCTCAC TAAACCTA CTC       TAA                                                                                                                                                                                                                                                                                                                                                              
AA      A        -   ----CCT   ATTTTAAGACTCTTTAAAATTTAAGATTCTTAAAGTTTATGAAGTTAACTTTAATAAAATAAAAGTTTGAAAACACAAACCTATTTTTTTTTAATTTTAACACTCTCATTTTCTTTTACTTACGTTTCTCTTCTCTTCTATACGAACCACACGAAGGTTTCTCTTCTTATGACTACGCCGTACTCTTTAACGTCCCTTTGGTCCTGTGCTGCCGCATGTGGTGGTGTGGACTGGTGTTATAAGTTAGTTGCCACATTCCGTACTGGGTCCGGGAGGCGTGACCGTTCGTGGAGGGGACGCACTACCTGTTGCTACTAACGAGGGGACTGACCGCTCACGTAAAGATGCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1850058

TAAGAGTGCGTTTGGATAGAGAATTTTAACTGAGGAAAGTAATTTATCAAAGAATTTAAATTTTTGTAATCTAAAATTCATTGTTTGGATTTTTTTATGAAGAATTTAAATTTTTGGAATTTTAAAACAAAATTTTAAGCAACTAAAAATGTGAAATTTCAATTTCCTTCTAAAAGGTGAGAAATTGAAATTCTCTTCTTGATAGAAGAATCTTCTAAAATGTTTGTGCATTTCCTTTATAACCTTCATCTTTTCTTTCACCTGAAAGTTTCCGAAATCTCGTTCTCGAATTTGCGACTCTTCTCTCACGCTGATGATCCTCTTCTTCCAGAAACACCGTCTGAGCTCGTGGAACATCGACTGTGTGTGGGCGTAGGGGGATACGTAGAAATGCACTCGCCAGTCAGGGGAGCAATCATCGTTGTCCATCACGCAGGGGAGGTGCTTGCCAGTGCGGAGGGCCTGGGTCATGCCTTACACCGTTGATTGAATATTGTGGTCAGGTGTGGTGGTGTACGCCGTCGTGTCCTGGTTTCCCTGCAATTTCTCATGCCGCATCAGTATTCTTCTCTTTGGAAGCACACCAAGCATATCTTCTCTTCTCTTTGCATTCATTTTCTTTTACTCTCACAATTTTAATTTTTTTTTATCCAAACACAAAAGTTTGAAAATAAAATAATTTCAATTGAAGTATTTGAAATTCTTAGAATTTAAAATTTCTCAGAATTTTAAATTCCCTCATCCAAATACACTCTAA

Copy Cancel