SE1820063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10391
  • Glycine max
  • SE1820063
  • Mutator
  • M10
  • Gm04:2193657-2194134
  • AAGTTCTTG
  • AAGTTCTTGGGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCAGCAATTAGGTGAATGGGTAAAATTGTCCTTGCATTAAAAAAATAATTTCTTCTTCCGGAAGAA

Secondary structure and sequence

TSD    TIR
5'



3'
    TT      G                           C                                          C                      C        AG     C      --  C  TTTG           -             CA   - AACC  - TTCCGAAAAGTTTCCAGAAGAAGGTTCTTCCGGTAGAACAATTTATTCTTCCGAAAGAAGGTTTTTCCG
 AAG  CTTGGG ACATGCTAGGTGCACCCAGCAACATTG TGGTGCACCCAGCAATTAGGTGAATGGGTAAAATTGTCCTTG ATTAAAAAAATAATTTCTTCTT CGGAAGAA  TTCTT CGGAAG  AA AA    TGTTCTACCGG AAGAACCTTTTTC  GAA G    TT C                                                                     
 |||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||| ||||||  || ||    ||||||||||| |||||||||||||  ||| |    || |                                                                     G
 TTC  GAACCC TGTACGATCCACGTGGGTCGTTGTAAC ACCACGTGGGTCGTTAATCCACTTACCTGTTTTAACAGGAAC TAATTTTTTTATTAAGGAAGAA GCCTTCTT  CCAAG AAGGCC  CT TG    TTAAATAAGAT GTCTTTTTGGAAG  AAG C    CT T                                                                     
G   TT      -                           A                                          A                      A        --     -      AT  -  ----           A             --   A ----  C TCAATGGCCTTCTTCAAGAAGGCCATTGAATAGGCCTTCTTCCAAGAAGGCCATCTTGTTTAACAAGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End