SE1820065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10393
  • Glycine max
  • SE1820065
  • Mutator
  • M13
  • Gm14:37954933-37955364
  • TAATTTCAA
  • AGGCAAAATTATAAATTTGGTCCCCCTATTTATCTCAGAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATTTCA   C      A            CCC     A          GTAAA    A                  CAC     T  TCC    -------     TTGCAATCCCGTTATTTCAGTCTTCAATCTCGAAATTGGACGTTCTTCAGTGTTGCTTGTCAATGTTAACCACCACGTGTCACACTTTTATTGGACGTTGACCGTCACATGTC
        AGG AAAATT TAAATTTGGTCC   TATTT TCTCAGAATT     TTTG TTCCCTTATAATTTAATT   GAATT AG   TCCA       ATTTC                                                                                                                 
        ||| |||||| ||||||||||||   ||||| ||||||||||     |||| ||||||||||||||||||   ||||| ||   ||||       |||||                                                                                                                 C
        TCC TTTTAA GTTTAAACCAGG   ATGAA AGAGTCTTAA     AAAC AGGGGAATATTAAATTAA   CTTAA TC   GCAA       GTAAC                                                                                                                 
AACTTTAA   A      C            AAA     C          -ACTA    C                  TTA     -  --C    CTAATAA     GAATAGAACTGGCAGTACACAACGTAAAAACAACCTGCAACTGACGGTGTACAGCCCTAAAATAACCTTCAATTGTAATTAATCCACGTGTTTTAATTGCAGGTTATTTGTGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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