SE1820071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10399
  • Glycine max
  • SE1820071
  • Mutator
  • M1
  • Gm04:18316811-18317202
  • AAAATAGTA
  • GGGTGTTGTTAGGTGCACCCAGCATTATTGCTAGTGCACCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATAGTA                   C            A         ACATTTTA      -  ------  AAAAT ATCCCTATGCTTTTTTCGCATTTGTGATGGGTGTGTGTGAAGGTGATCCGTAAATCATACGGATCAAGTTGATCCGTAAGGTTGATACGGATCAACTTGATCCGTAAGTCTTTTACGGAACAA
         GGGTGTTGTTAGGTGCACC AGCATTATTGCT GTGCACCCA        TTACAA TA      CC     T                                                                                                                           
         ||||||||||||||||||| |||||||||||| |||||||||        |||||| ||      ||     |                                                                                                                           T
         CCCACAACGATCCACGTGG TCGTAATAACGA CACGTGGGT        ATGAAT CC      CT     A                                                                                                                           
ATGATAAAA                   A            C         -------C      T  ACTTTA  ----- CTTTTATGGGAACTAGGTATTCATAAATTTAACTAGACATTTTCAGAATGCCTAGTTGAACTAGGCATTCGAAAAATGTCAAGTTGAACTAGGCATTCAAAAAATACCTAGTTCAACTAAGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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