Plant MITE

SE1820074

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10402
Glycine max
SE1820074
Mutator
M19
Gm10:6550962-6551243
ATGCTTGAT
GCTTGATGAGTGCTGCTAGGTGCACTAAGCATT

Secondary structure and sequence

TSD TIR

5'

3'

   AT  TTG       C             A      ----------AT     --- TGCACCCAGCACTAACCACAAAAAGACAGAAATACCCCTTACGGATCAAGTTGATCCATAAGTTAATTTTTAAGACTTACGGATCAACTTA
     GC   ATGAGTG TGCTAGGTGCACT AGCATT            TGCTG   G                                                                                           
     ||   ||||||| ||||||||||||| ||||||            |||||   |                                                                                           A
     CG   TACTCAC ACGATCCACGTGG TTGTAA            GTTTT   G                                                                                           
TAGTT  ---       A             G      GAAACTTTTACC     AAC GGGACGATTAAAGAGAGGAATGCCTAGTTGAACTAGGCATTCAGAATTTTTAGTCGAATACTTAGTTGAACTAGACATTTTCTGAATGCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820074

ATGCTTGATGAGTGCTGCTAGGTGCACTAAGCATTATTGCTGGTGCACCCAGCACTAACCACAAAAAGACAGAAATACCCCTTACGGATCAAGTTGATCCATAAGTTAATTTTTAAGACTTACGGATCAACTTAATTCGTAAGTCTTTTACAGATCAAGTTGATTCATAAGCTGATTTTTAAGACTTACGGATCAAGTTGATCCGTAAGGAGAGAAATTAGCAGGGGCAATTTTGCCATTTTCAAAGAATGTTGGGTGCACCTAGCAACACTCATGCTTGAT

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