SE1810076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10404
  • Glycine max
  • SE1810076
  • Tc1/Mariner
  • St5
  • Gm14:17698582-17698930
  • TA
  • TACTACCTCCATTCCTATATATAAGAAATAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A       A                 AACATTTTTTTGTTCCTAAATATAAGAAACATGCGATCACTTTTAAGTGCATTAATTGTTAATTTCCTTCTATACCCTTGTTTATTGTAAAGTCTATTAATGAGAGTCATACTCATTGGTGGAAAAAGTTATCCCTTG
TACTACCTCC TTCCTAT TATAAGAAATAAATGGA                                                                                                                                          
|||||||||| ||||||| |||||||||||||||||                                                                                                                                          A
ATGATGGAGG AAGGATA ATATTCTTTGTTTATTG                                                                                                                                          
          C       A                 ATTAAACAGTTCTGGTTATTTTTACCAATTCAATAAATAAAAATTAATTACTATAGTATTGAAAGTTAAAATAAGGTTTTTATGGGTAACTTAATTAACCAAATTCACCACCAACATAAATTACTGTGATGAGTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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