SE1820079

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10407
  • Glycine max
  • SE1820079
  • Mutator
  • M1
  • Gm10:38179670-38180115
  • CCTTGAAAG
  • GGGTGTTGCTAGGTGCACCTAGCATTATTGTTGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTTGAAA                      C             CACCCAGC          ------------      --A  A       A  ------  TTTTT --   ATTAGTGATGGGTGTGCGTGAGGGTGGTCCGTAAATCGTACGGATCAAGTTGATCCGTAAGGTTGATAAGGATCAAGTTGATCCGTATGTTGATATTAAGCATACAGATCAACTTGATCCATA
        GGGTGTTGCTAGGTGCACCTAG ATTATTGTTGGTG        ATTTTTAAAA            AATACC   AA CTGTCCT GC      GT     T  CGC                                                                                                                           
        |||||||||||||||||||||| |||||||||||||        ||||||||||            ||||||   || ||||||| ||      ||     |  |||                                                                                                                            
        CCCACAACGATCCACGTGGGTC TAATAACGACCAC        TGAGAATTTT            TTATGG   TT GACATTC GG      CA     A  AGG                                                                                                                           
AAAGTTCC                      C             --ATAGAT          ACTTTACTGCTT      AAA  A       -  AAAATT  ----- CT   CATTTTCCGAATGCCTAGTTCAACTAGACATTCGGAAAATGTTTAGTTGAACTAAACATTCGGAAAATATCTTATTGTGCTTAATTGAACTAGGCATTTCTAGTTGAACTAGGCATTTTCCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3