SE1820088

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10416
  • Glycine max
  • SE1820088
  • Mutator
  • M24
  • Gm06:17330429-17330857
  • TATAAAAAA
  • GTTTAATTGCAAAAATAGTTCCCTTGTTTATCCCAACTCATTAAATCGGTCCCCTATATTTTAATTCACTATGAGAGTCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAAAAAT                                       A              -                  G         CCCCCCCCCCC     -        T           C          A             TA    TAAA   C     TTGTCATGTGT                            T   TTTCTAT
          GTTTAATTGCAAAAATAGTTCCCTTGTTTATCCCAACTC TTAAATCGGTCCCC TATATTTTAATTCACTAT AGAGTCCCC           TTTTC CCAAATTT CTATTTGAGTC TCATGGCTAA ATTGGACGTTGAC  TTAA    AAA GTTGA           CTGCCACGTGTCATTGTCTTATTGGTCG TAA       
          ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||           ||||| |||||||| ||||||||||| |||||||||| |||||||||||||  ||||    ||| |||||           |||||||||||||||||||||||||||| |||       T
          CAAATTAATGTTTTTATCAGGGGGATAAATAGGGTTGAG GATTTAGCTAGGGG ATATAAAATTAAGTGATA TCTCAGGGG           AAAAG GGTTTAAA GATAAACTCAG GGTACCGATT TAACCTGTAATTG  AATT    TTT CAACT           GATGGTGTACAGTAATAGAATAACCAGC ATT       
AAAAAATATC                                       C              G                  A         -------ACAA     A        T           A          C             CC    CCCC   A     -----------                            C   TTACCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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