SE1820089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10417
  • Glycine max
  • SE1820089
  • Mutator
  • M10
  • Gm19:50063873-50064151
  • CAAAATATA
  • GGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCAACAATTAAGTGAATGGGCAAAATTGCCCCTGTTAAAAAAAATAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAATATA                                          A      A                    C   --       A      -A    T    --    AGGTTCTTCCGGTAGAACAATTTATT
         GGGACATGCTAGGTGCACCCAGCAACATTGCTGGTGCACCCA CAATTA GTGAATGGGCAAAATTGCCC TGT  TAAAAAA ATAATT  TTCT CCGG  AAGA                          
         |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||  ||||||| ||||||  |||| ||||  ||||                          A
         CCCTGTACGATCCACGTGGGTCGTTGTAACGACCACGTGGGT GTTAAT CACTTACCCGTTTTAACGGG ACG  ATTTTTT TATTAA  AAGA AAGC  TCTT                          
ATATAAAAC                                          C      C                    A   TA       C      AG    -    CT    GTTAAACACGAGATAGCTTTCTTGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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