Plant MITE

SE1820095

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10423
Glycine max
SE1820095
Mutator
M1
Gm02:43161070-43161653
ATGCATCAA
ATGCATCAAGGGTGATGCTAGGTGCACCAGCATTATTGCTTGTGCACCCAGCA

Secondary structure and sequence

TSD TIR

5'

3'

         CAA                   -            T        A   ATTGTTT      - CCTAA -  CCCCTGGTGTCTTCTTCCTTTTGAAGTTGGTTGCAGTGTTATTTTTTCTCTTACGCCTCCATTGTTTTTTTCTTCGCTTTCTCCCTCTGTTGTTGGTTCGTGTTGGTTTTTCATTGTTGAGAGAGTTGCTGCTTGGGTCGAGATGAAAGTGTTATGGGTCGGTGGTGATTGTTGCGGTGGTTGTTTCGTCGTCGTCGGCATTTAAGGTATGCCATTTTA
   ATGCAT   GGGTGATGCTAGGTGCACC AGCATTATTGCT GTGCACCC GCA       TTAATT C     A TG                                                                                                                                                                                                                           
   ||||||   ||||||||||||||||||| |||||||||||| |||||||| |||       |||||| |     | ||                                                                                                                                                                                                                            
   TACGTA   CCCACTACGATCCACGTGG TCGTAATAACGA TACGTGGG CGT       TCACTT C     C GT                                                                                                                                                                                                                           
AAC      ---                   G            C        A   --AAAAT      A ----- C  TTTTACAGGAAGTGAGTTCAACTAGGCATACTGAGTATACCTAGTTGAACTAGACATACTGAGTATGCCTAGTTGAACTAAGCATACAAAGTATGTCTAGTTGAACTAGGCATACTAGATATGCCTAGTTGAACTAGGCATGTCTAGTATGCCTAGTTGAACTAGACATGAATATTGAATGTGTATGCCTAGTTGAGTACGTGTGGGTCGTTTTACGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820095

ATGCATCAAGGGTGATGCTAGGTGCACCAGCATTATTGCTTGTGCACCCAGCAATTGTTTTTAATTCCCTAAATGCCCCTGGTGTCTTCTTCCTTTTGAAGTTGGTTGCAGTGTTATTTTTTCTCTTACGCCTCCATTGTTTTTTTCTTCGCTTTCTCCCTCTGTTGTTGGTTCGTGTTGGTTTTTCATTGTTGAGAGAGTTGCTGCTTGGGTCGAGATGAAAGTGTTATGGGTCGGTGGTGATTGTTGCGGTGGTTGTTTCGTCGTCGTCGGCATTTAAGGTATGCCATTTTACTGCATTTTGCTGGGTGTGCATGAGTTGATCCGTATGTGTAAGTTATAAGTACAGATCAAGTTGATCCGTATGATCTGTACGGATCAAGTTGATCCGTATAGATCATACGGATCAAGTTGATCTGTATGAAACATACGAATCAAGTTGATCCGTATGAGTCATACAGATCAAGTTGATCCATATGAGTCATACGGATCAACTTGAGTGAAGGACATTTTTGCCCATTCACTTAAAATGCAGGGTGCATCAGCAATAATGCTGGGTGCACCTAGCATCACCCATGCATCAA

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