SE1850096

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10424
  • Glycine max
  • SE1850096
  • PIF/harbinger
  • To15
  • Gm05:33520466-33520625
  • TTA
  • AGGCTGTGTTTGTTTTGAAGAATAAAAGTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C        -  TT     A         TATACA      -------- TTTTATACTTTTTTTAACGTGGGACTCACA
  AGG TGTGTTTG TT  GAAGA TAAAAGTGA      AGAGAA        A                              
  ||| |||||||| ||  ||||| |||||||||      ||||||        |                              T
  TCC ACACAAAC AA  CTTCT ATTTTTATT      CACCTT        A                              
AT   C        C  CT     -         -TTTCT      TATTTTAT TTTAAAAACTTAATTTCGTTTCAGATTCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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