Plant MITE

SE1830097

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10425
Glycine max
SE1830097
hAT
Hat4
Gm17:35003162-35003793
GTTGTTTT
TTAGGGGTGGGAATAGGCCAGACCGG

Secondary structure and sequence

TSD TIR

5'

3'

GTTGTTT                     A    CCTA    -------    TACGATCTGGTCTACATAAAATCTGACCTGAACTGACCTATTTAATTAAAAGGTTAGGCTCAGGCTTTTTTAAAAGCCTATTAAGTTAAATAGACCAGGCTTAGGCTTATTAAAAAGCCTTATAAGCCTGATAGGTCGGCCTATATATATATATATATATATATTATTTTTTGGGTACCAATATATAATATTTTTTGGATACAATTAATTTTTTTTTGAAATTATCAGACTTTGATTACATATTACTGTTCCATAACTTCTATTCCTA
       TTAGGGGTGGGAATAGGCCAG CCGG    CAGG       AGCC                                                                                                                                                                                                                                                                            
       ||||||||||||||||||||| ||||    ||||       ||||                                                                                                                                                                                                                                                                            T
       GATCCCCACTCTTATCCGGTC GGTC    GTCC       TCCG                                                                                                                                                                                                                                                                            
TTTTGTT                     C    --TG    GAAACTT    AACTCGGATCGGATGCTACTTAGAAACTCTGGACTCAGACCGGATATCGGATAGTTTCTGAAAATAAAACCGAGCCGGACTGGAAAAATTTTCAGACCGGATCGGACTATCGGAAAAATTTTCGGAATAAGTGTTATTTATAAATTATAAAATACCTCATCCTTGCATTATCCTTTCAATTTTTTTCTTTTTCTTTTCAGTTAGTTTTATTACTCCTTATATTTTCCCGTGTACTGAATGTGGATTTAACATTAATTTCAGGAACTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830097

GTTGTTTTTAGGGGTGGGAATAGGCCAGACCGGCCTACAGGAGCCTACGATCTGGTCTACATAAAATCTGACCTGAACTGACCTATTTAATTAAAAGGTTAGGCTCAGGCTTTTTTAAAAGCCTATTAAGTTAAATAGACCAGGCTTAGGCTTATTAAAAAGCCTTATAAGCCTGATAGGTCGGCCTATATATATATATATATATATATTATTTTTTGGGTACCAATATATAATATTTTTTGGATACAATTAATTTTTTTTTGAAATTATCAGACTTTGATTACATATTACTGTTCCATAACTTCTATTCCTATAATCAAGGACTTTAATTACAATTTAGGTGTAAGTCATGTGCCCTTTTATATTCCTCATTATTTTGATTGACTTTTCTTTTTCTTTTTTTAACTTTCCTATTACGTTCCTACTCCATAAAATATTAAATATTTATTGTGAATAAGGCTTTTAAAAAGGCTATCAGGCTAGGCCAGACTTTTAAAAAGGTCAGGCCGAGCCAAAATAAAAGTCTTTGATAGGCTATAGGCCAGACTCAGGTCTCAAAGATTCATCGTAGGCTAGGCTCAAGCCTTTCAAAGCCTGGTCTGGCCTGGCCTATTCTCACCCCTAGTTGTTTT

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