Plant MITE

SE1820101

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10429
Glycine max
SE1820101
Mutator
M2
Gm17:33824784-33825055
AATATTCTA
GAGCAAATTACAGCAACAGCTCCTGAGCTTTT

Secondary structure and sequence

TSD TIR

5'

3'

AATATTCTA                  G  C     C    ATCA         TAACCTGTCCTTTTTG      CT   -CT  CTCTCCTTTAAGTTTGAAAATATTACTCTAGCACCACCTATGTTTGTAAACATTACACT
         GAGCAAATTACAGCAACA CT CTGAG TTTT    AATTACACA                ATTTTC  ACT   AA                                                           
         |||||||||||||||||| || ||||| ||||    |||||||||                ||||||  |||   ||                                                           A
         CTTGTTTAATGTCGTTGT GG GACTC AAAG    TTAATGTGT                TCGTGG  GGA   AA                                                           
ATCTTATAA                  G  T     C    CACA         ----------------      --   CGA  AAATTGGTAATGAAAGTGGAGGGAACATCCCCCACAATTACATTCTAAACTCCTCCACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820101

AATATTCTAGAGCAAATTACAGCAACAGCTCCTGAGCTTTTATCAAATTACACATAACCTGTCCTTTTTGATTTTCCTACTCTAACTCTCCTTTAAGTTTGAAAATATTACTCTAGCACCACCTATGTTTGTAAACATTACACTAACACCTCCTCAAATCTTACATTAACACCCCCTACAAGGGAGGTGAAAGTAATGGTTAAAAAAGCAGGGGTGCTTGTGTAATTACACGAAACCTCAGTGGGTGTTGCTGTAATTTGTTCAATATTCTA

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