Plant MITE

SE1820105

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10433
Glycine max
SE1820105
Mutator
M25
Gm11:17751734-17751928
TAGGTTTTA
TAGGTTTTAGAGAAATGCTAGCAACACTCTCTATTATTGGTTGAAATTTATTGAAAATCACAAATTTTGTGGGTC

Secondary structure and sequence

TSD TIR

5'

3'

    T       AAA        --          --------------------------         G               C     T  -T       TCACCTCT
TAGG TTTAGAG   TGCTAGCA  ACACTCTCTA                          TTATTGGTT AAATTTATTGAAAAT ACAAA TT  GTGGGTC        
|||| |||||||   ||||||||  ||||||||||                          ||||||||| ||||||||||||||| ||||| ||  |||||||         
ATTT GGATCTC   ACGATCGT  TGTGAGAGAT                          GGTAACCAA TTTAAATAACTTTTG TGTTT AG  CACTCAG        
    T       CTC        TG          TGTGTGAGGAGGATTGTGTGTGAAAA         A               A     T  TC       TAATTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820105

TAGGTTTTAGAGAAATGCTAGCAACACTCTCTATTATTGGTTGAAATTTATTGAAAATCACAAATTTTGTGGGTCTCACCTCTCATTTAATGACTCACCTGATTTTGTAGTTTTCAATAAATTTAAACCAATGGAAAAGTGTGTGTTAGGAGGAGTGTGTTAGAGAGTGTGTTGCTAGCACTCCTCTAGGTTTTA

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