Plant MITE

SE1830108

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10436
Glycine max
SE1830108
hAT
Hat2
Gm06:40824530-40825142
AAGGGAAA
TAGACATGGCAA

Secondary structure and sequence

TSD TIR

5'

3'

AAGGGAAA            ----T    --     --      C   TATTGTCTCCCCAATCCCCGACCCCGACTCCCCAACATGTCCCCATACACGTACCCAATACTCGACGGGTTAAAATTTATTATCTCATTCCCGTACCCGTTGGGTATCGGGTATCCCTGATCCCGTCCCGTACCCGATTCAAATTAGAAAAATATTTTTTTGTAAAGAAAATATAAAAAATTTGATTTTAGAAAAAATAAATTGATTGTTAAACATTTATTTTTAACTACTTATATATCAATAAATTTATTATAGCGCATGTG
        TAGACATGGCAA     GGGA  TGGGG  CGGGGA GAG                                                                                                                                                                                                                                                                       
        ||||||||||||     ||||  |||||  |||||| |||                                                                                                                                                                                                                                                                        
        ATCTGTACCGTT     GGAC  GGGCA  CATGGG CAG                                                                                                                                                                                                                                                                       
AAAGGGAA            CTTTT    AT     CC      -   GTTTAGACAGGACTGAAACTACCCATTATGGGCTCAACTGGCCCGTACTCAAGCCCAAAAGGAGCTGTTGGTTTTCAGCCCATGCCCATGCCCATACTCTAATTACGTAGACGGAACTGGGGCTTGGGCCTGGACGGGGCGGTGAATTTTCAAAATCTTAAAAACATATTAAATTAGTTTTCCGGATCTTAAAAATAATAATCAATTAAAATAAAATCTTAAAAATGTATTAAATTATAAGAAAAGAATTGCTAAAAACATCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830108

AAGGGAAATAGACATGGCAATGGGATGGGGCGGGGACGAGTATTGTCTCCCCAATCCCCGACCCCGACTCCCCAACATGTCCCCATACACGTACCCAATACTCGACGGGTTAAAATTTATTATCTCATTCCCGTACCCGTTGGGTATCGGGTATCCCTGATCCCGTCCCGTACCCGATTCAAATTAGAAAAATATTTTTTTGTAAAGAAAATATAAAAAATTTGATTTTAGAAAAAATAAATTGATTGTTAAACATTTATTTTTAACTACTTATATATCAATAAATTTATTATAGCGCATGTGTCTACAAAAATCGTTAAGAAAAGAATATTAAATTATGTAAAAATTCTAAAATAAAATTAACTAATAATAAAAATTCTAGGCCTTTTGATTAAATTATACAAAAATTCTAAAACTTTTAAGTGGCGGGGCAGGTCCGGGTTCGGGGTCAAGGCAGATGCATTAATCTCATACCCGTACCCGTACCCGACTTTTGGTTGTCGAGGAAAACCCGAACTCATGCCCGGTCAACTCGGGTATTACCCATCAAAGTCAGGACAGATTTGGACGGGTACCCACGGGTACAGGTTTTCTTGCCATGTCTAAAGGGAAA

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