SE1820114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10442
  • Glycine max
  • SE1820114
  • Mutator
  • M18
  • Gm02:30778211-30778411
  • TTTAAGTAA
  • AAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAAGT    CAAA                A    C               T     A    -TCT     -----------      -   -    ---      TT
       AAGG    TGCTAACCAGTGCCCT AGGG ATTGGTTAAGGAACT AAAGT GAAA    TTTAT           TAGGAG GCG GAAA   ATTGTG  
       ||||    |||||||||||||||| |||| ||||||||||||||| ||||| ||||    |||||           |||||| ||| ||||   ||||||  G
       TTCC    ACGATTGGTTACGGGA TCCC TAACCAATTCCTTGA TTTTA CTTT    AAATA           ATCTTC CGC TTTT   TAGTAC  
AATGAAT    CAGA                A    A               -     C    TCAT     ACACATTTAGT      T   A    TTC      CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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