SE1850116

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10444
  • Glycine max
  • SE1850116
  • PIF/harbinger
  • To1
  • Gm13:7157314-7157576
  • TAT
  • CCTTGTTTGGATAAACTTCTTTTATAAACACTTATAGGAGAAGAAAATAAGAAAGTAAAATAAATTAAGTTTCTTTCATAAGTTAAAATTAGTTTTGCATAAGCTAAATTGTAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATGA              A      TT    A                 A       A       A              C                  -T       C    TT      ACTCTCATTTA
     CCTTGTTTGGATAA CTTCTT  ATAA CACTTATAGGAGAAGAA ATAAGAA GTAAAAT AATTAAGTTTCTTT ATAAGTTAAAATTAGTTT  GCATAAG TAAA  GTAGGA           
     |||||||||||||| ||||||  |||| ||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||  ||||||| ||||  ||||||           A
     GGGACAAACCTATT GAAGGG  TATT GTGAATATTCTCTTCTT TATTTTT CATTTTA TTAATTCAAAGAGG TATTCAATTTTAATCGAA  CGTATTC ATTT  TATTCT           
TATCC              C      -T    A                 A       A       C              T                  TT       A    --      AAAACCTCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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