SE1830118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10446
  • Glycine max
  • SE1830118
  • hAT
  • Hat6
  • Gm05:17859844-17860450
  • ATTACAAA
  • CAAGGTTATCAAACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTACAAA  A             ----   A     CAT     GGTGAGAGTTTCATAGACACGACTCGTGGACTCAACTCATAGACTCGTAAGAGTCCACTTCATATAAAAATAATAACAAAATATCTATAAATAACATACCAATTAAACATTTCAACAATATAATAAATCAAAATAGTAAATCATAAATTTCACAATACTTAAATCTAGTAATGCATCACTACTAGATAATAACTTGCAGATGTTATAGTAGTGGTAGATCATTCTCATTGAGGATTTGATGTTAGTAGAGAACAATGTTTGA
        CA GGTTATCAAACTC    GAG GTTTA   AGACT                                                                                                                                                                                                                                                                      
        || |||||||||||||    ||| |||||   |||||                                                                                                                                                                                                                                                                      T
        GT CCAATAGTTTGAG    CAA TTGAG   CGATT                                                                                                                                                                                                                                                                      
AAACATTA  A             AATT   -     ---     GAGAATGCTCAAATGCTCAGATGAATTGGAGACACTCAACTGAGAACTCATTTGAGAAAAAAATCAACTGAGACTCATCTGAGATATTTGAGATTCATTTGAGCCATTTGAGAGCTCAAATGGTGGCTCAGTTGCTCAGTTGTTCAATTTTTATAATCTGGTTTTACATTCAGTAAAACCCAACAAAAAACAAACAAATCACAAGTTGTATGGAAGTAAATCACATAATAAGAGTTTATGTTTTTAAGAGTGTAAATTATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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