SE1850122

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10450
  • Glycine max
  • SE1850122
  • PIF/harbinger
  • To3
  • Gm01:35642278-35642731
  • TTA
  • AGAGTGCGTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
TT      C     --  -  --   A     AACTCAGGAAAGTAATTTATTAGAAAATTTGAATTTCTGTAATTTAAAATTTATTGTTTGGATGCTTTTTATGAAGAATTTAAAATTTTGGAATTTTAAAACAGAATTTTAAACAACTAAAAATCTGGAATTTCAATTTTCTTCTAAAAGGTGAGAAATTGAAATTCTCTTCTTATAGTCTTTTTTCAAGAAACACCG
  AGAGTG GTTTG  AA TA  GAT ATTTT                                                                                                                                                                                                      
  |||||| |||||  || ||  ||| |||||                                                                                                                                                                                                       
  TCTCAC CAAAC  AC TC  TAA ATTTT                                                                                                                                                                                                      
AT      A     CT  C  TT   -     AAGACTCTTTAAAATTTAAGATTCTTAAAATTTATGAAGTTAACTTTAAGAAAATAAAAGTTTTAAAACACAAACCTATTTTTTTAATTTTAATACTCCTACTTTTTTTACTTACTTTTTTTTCTCTTCTATACTAACCACACGATCAATATGCACAAGGAGATACGAGTGTGGGCTAGCTATAAAATTCTCGAGTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End