SE1850128

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10456
  • Glycine max
  • SE1850128
  • PIF/harbinger
  • To1
  • Gm08:46106678-46106931
  • TAA
  • AGACCTGGTTTGGATAAATTTTTCATTAAGCATATAGGAGAAGAAAATAAGAAGGAAAAATGAAATAAAGTTCTTCAATAAGTTTAAATCAACTTACACACTTCAACTTTTATAGAAG

Secondary structure and sequence

TSD    TIR
5'



3'
TA  AC             AT      T       --                A    G    A   AA    G      A       T  A   A    CA  C    A     AT     CTCTCT
  AG  CTGGTTTGGATAA  TTTTCA TAAGCAT  ATAGGAGAAGAAAATA GAAG AAAA TGA  TAAA TTCTTC ATAAGTT AA TCA CTTA  CA TTCA CTTTT  AGAAG      
  ||  |||||||||||||  |||||| |||||||  |||||||||||||||| |||| |||| |||  |||| |||||| ||||||| || ||| ||||  || |||| |||||  |||||      C
  TC  GATCAAACCTATT  AAGAGT ATTCGTG  TATCCTCTTCTTTTAT TTTC TTTT ATT  GTTT AAGAAG TATTTAA TT AGT GAAT  GT GAGT GAAAA  TCTTC      
AA  GT             AC      T       AA                A    G    A   -A    G      G       T  A   G    AC  A    C     CC     AATCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End