SE1820129

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10457
  • Glycine max
  • SE1820129
  • Mutator
  • M16
  • Gm19:36729051-36729837
  • GCATTTGTT
  • GCATTTGTTGGCAAATAGACCAAAGCGGGTTCCTTTTAAAAATTTATTCCCAGAAGGGGTCTGTTTTGAAACTTTTTTTAGAGGGGGTATGTTTTTGGAGGGAACTCGCCAGTGGAGTTGGCGAGTTGGACATGTGGCAGCAGTTGGAAAAACTCGCCAGTGGAGATAGCGAGACACGATCCACGTGGCGGGTCCCGTCATTCGTAATGGTAAAATACTTTTTTTACGAAATTTTTTTAACTTGAAACGGGTATAACTTTTGATAGGAATGTCCGTTTGAGGCCCATAATATGTCAAAATGCTCGAAATTGAATGAAGAATCCCCTGG

Secondary structure and sequence

TSD    TIR
5'



3'
    TT   T       A  C                  A         CCC     -    C               T           A                   C                                      AAA       C         A          A               C                A    AC                      -                                 C                                                 C    AAATCCTTA       TCATTTTTCCAAAAAAACGCTTCTAAGTAGCTCAAAAATAGGATTCTTTATTA
 GCA  TGT GGCAAAT GA CAAAGCGGGTTCCTTTTA AAATTTATT   AGAAG GGGT TGTTTTGAAACTTTT TTAGAGGGGGT TGTTTTTGGAGGGAACTCG CAGTGGAGTTGGCGAGTTGGACATGTGGCAGCAGTTGG   AACTCGC AGTGGAGAT GCGAGACACG TCCACGTGGCGGGTC CGTCATTCGTAATGGT AAAT  TTTTTTTACGAAATTTTTTTAA CTTGAAACGGGTATAACTTTTGATAGGAATGTC GTTTGAGGCCCATAATATGTCAAAATGCTCGAAATTGAATGAAGAATCC CTGG         GGTCAAC                                                     
 |||  ||| ||||||| || |||||||||||||||||| |||||||||   ||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||| |||||||||| ||||||||||||||| |||||||||||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||                                                      
 TGT  ACA CCGTTTA CT GTTTCGTCCAAGGAAAAT TTTGAATAA   TTTTC CCCA ACAAAACTTTGAAAA AGTCTCCCCCA ACAAAAACCTCCTTTGAGT GTTACCTCAATCGCTCAACCTGTGCACCGTCGTTGACC   TTGAGCG TCACCTCTA CGCTCTGTGC AGGTGCACCGCCCAG GCGGTAAGCATTACCG TTTA  AAAAAAATGCTTTAAAAAAATT GAACTTTGTCCATATTGAAAACTATCCTTACAG CAAACTCCGGGTGTTATACGGTTTTACGAGCTTTAACTTACTTCTTAGG GACC         TTTAGGG                                                     
T   TT   -       A  A                  C         AAA     T    -               C           A                   A                                      ACC       C         C          C               A                C    CA                      T                                 A                                                 A    --------G       ACTTCCCCTAAACCAGTTGAGCAAAAAGGTTTTTTAAGTTGGTGGGTAAAAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End