SE1820137

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10465
  • Glycine max
  • SE1820137
  • Mutator
  • M1
  • Gm10:24271963-24272492
  • AAAGAATGT
  • TGGGTGTTGCTAGGTGCACCTAGCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAGAATG                           ----   GTT     ACCCAGCACTTAAGATGAAATGACGAAAATACCTGATCCGTAAGCTTTTTAAGTTGATTCGTAAAAAACTTATAGTTCAACTTGATCCGTAAGCCTTTTATGGATCAACTTGATTCGTAGAAGCCTTACGAATCAAGTTGATCCGTAAGGTTTCTACAGATCAAGTTGATCCATGTTGTTCCGTAAAAGGCTTATGGATCAACTTGATCTGTAAGCCT
        TGGGTGTTGCTAGGTGCACCTAGCATT    ATT   GGTGC                                                                                                                                                                                                                          
        |||||||||||||||||||||||||||    |||   |||||                                                                                                                                                                                                                          T
        ACCCACAACGATCCACGTGGGTTGTAA    TTT   TTATG                                                                                                                                                                                                                          
TGTAAGAA                           AAGA   ---     GTTTTTAACGGGGACGTAAAAAAAGTGTAAACACTACCCACACGCACTTCCATCAGGCATTTAGCATGCCTAGTTAAACTAGGCATTCCAACTATGCCTAGTTCAACTAGGCATTCCAACTATGCTTAGTTCAACTAGGTATACAACGCATTCTGAAGATGTCTAGTTCAACTAGACACAACAAGGCATTTTCCAAATACTTAGTTCAACTAAAGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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