Plant MITE

SE1820139

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10467
Glycine max
SE1820139
Mutator
M1
Gm15:7695833-7696180
CAAGCAAAT
GC

Secondary structure and sequence

TSD TIR

5'

3'

 CAA  AAAT    G                      ------------------TT     -   ACCCAGCATTCTTTGAAAATGGTCAAACCGTCCCTGCTAATTTCTTCCCTTACGGATCAAGTTGATCCGTAAGTCTTAAAAATTAACTTACGGATCAACTTGATTTGTAAAAGACTTA
    GC    GAGT TTGCTAGGTGCACCCAGCATTA                    GCAGG TGC                                                                                                                      
    ||    |||| ||||||||||||||||||||||                    ||||| |||                                                                                                                      T
    CG    CTTA GACGATCCACGTGGGTCGTGAT                    GGGAA TGC                                                                                                                      
TAAA  -AAC    G                      TAGTGCTTTTTTATCTTTAT     A   CTAGTTCAACTAAGCATTCAATTAAAAATTCTGAATGCCTAGTTGAACTAGGCATTTAGAAAATGCTTAGTTCGACTAAGCATTCAACTAAAAATTCTGAATGCCTAGTTCAATTAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820139

CAAGCAAATGAGTGTTGCTAGGTGCACCCAGCATTATTGCAGGTGCACCCAGCATTCTTTGAAAATGGTCAAACCGTCCCTGCTAATTTCTTCCCTTACGGATCAAGTTGATCCGTAAGTCTTAAAAATTAACTTACGGATCAACTTGATTTGTAAAAGACTTATGGATTAACTTGATCCGTAAGTCTTAAAAATCAACTTACGAATCAGCTTGATTCGTAAAAGATTTACGGATCAAGTTGATCCGTAAGTCTTAAAAATTAACTTACGAATCAACTTGATCCGTAAAGGGTATTTCTATTTTTTCGTGATTAGTGCTGGGTGCACCTAGCAGGATTCCAAGCAAAT

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