SE1850140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10468
  • Glycine max
  • SE1850140
  • PIF/harbinger
  • To3
  • Gm10:22702736-22703178
  • TTA
  • AGAGTGCGTTTAGATAGAGAATTTTAATTGAGGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT      C    A   A     T     ----        -----AGTAAT   T      ATTTGAATTTCTGTAATTTAGAATTCATTGTTTGGATGCTTTTTATGAAGAATTTAAAATTTTGGAATTTTAAAACAAAATTTTAAACAACTAAAAATCTGGAATTTCAATTTCCTTCTAAAAGGTGAGAAATTGAAATTCTCTTCTTACAGTCTTCTTCAATT
  AGAGTG GTTT GAT GAGAA TTTAA    TTGAGGAA           TTA CAGAGA                                                                                                                                                                    
  |||||| |||| ||| ||||| |||||    ||||||||           ||| ||||||                                                                                                                                                                    T
  TCTCAC CAAA CTA TTCTT AAATT    AACTCTTT           TTC TTAAAG                                                                                                                                                                    
AT      A    C   C     T     TTAA        AAAATTTAAGA   -      TTTATAAAGTTAACTTTAAGAAAATAAAATCTTTAAAACACAAACCTATTTTTTTAATTTTAATATTCCTACTTTTTTTCTCTTTTATACCAACCACACGATCAATATGCACAAGGAGATACGAGTGTGGGCTAGCTATAAAATCTTCGAGTGGAAATTCTTCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End