SE1820142

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10470
  • Glycine max
  • SE1820142
  • Mutator
  • M6
  • Gm17:30802920-30803410
  • TAAAGAATA
  • TAGGCAAAATTGTATTTTTGGTCCCCCAGTTTATCTCTAGTTTCGGATTTGGTCCCCCAGTAATTTAATTCACGAATTTGGTCCTCCTATTTTGTAAAAGCATGCAATGTTGGTCCCCTAGGCCACAATTGGACGTTGACTGTTAACAAGTGATGTTGACTACCACATGTCACGTTCTTATTGGATGATGATTGTCACGTGTCATATTCTGCTTGGTCAATGAAAACACCAATGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAGAA              TT                           C              A                                        G A                                                           A    A                           -   C       A     C    TCA   AA   A   A  C TTTC
       TAGGCAAAATTGTA  TTTGGTCCCCCAGTTTATCTCTAGTTT GGATTTGGTCCCCC GTAATTTAATTCACGAATTTGGTCCTCCTATTTTGTAAAA C TGCAATGTTGGTCCCCTAGGCCACAATTGGACGTTGACTGTTAACAAGTGATGTTGACT CCAC TGTCACGTTCTTATTGGATGATGATTG TCA GTGTCAT TTCTG TTGG   ATG  AAC CCA TG A    
       ||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||   |||  ||| ||| || |     
       ATCCGTTTTAACGT  AAACTAGGGGGTCAAATAGAGGTCAAA CCTAAACCAGGGGG CATTAAATTAAGTGCTTAAACCAGGAGGATAAAACATTTT G ACGTTACAACCAGGGGGTCCGGTGTTAACCTGCAACTGGTAATTGTTCACTACAACTGA GGTG ACAGTGCAAGAATAACCTACTACTGAC AGT CACAGTA AAGAC AACC   TAC  TTG GGT AC T    
ATAAGAA              TT                           A              C                                        A C                                                           C    C                           C   A       C     T    ---   AG   A   -  T TCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End