Plant MITE

SE1820145

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10473
Glycine max
SE1820145
Mutator
M1
Gm12:39506518-39506879
ACATTTTTT
TGGGTGTTGCTAGGTGCACCTAGCATTATTGCTGGTGCACCAGCA

Secondary structure and sequence

TSD TIR

5'

3'

ACATTTTT                                         -    CTTAAGG       A     ATACCC   A      ------------------------AGCCATT  AGTTGATCTATAAAAGCCTTACAGATCAAGTTGATTCGTAAGACTTCTACGGATCAAGTTGATCCGTATTGTTC
        TGGGTGTTGCTAGGTGCACCTAGCATTATTGCTGGTGCACC AGCA       TGAAATG CGAAA      TTG TTCGTA                               TA                                                                          
        ||||||||||||||||||||||||||||||||||||||||| ||||       ||||||| |||||      ||| ||||||                               ||                                                                          C
        ACCCACAACGATCCACGTGGGTCGTAATAACGACCACGTGG TCGT       ATTTTAT GTTTT      AAC AGGCAT                               CC                                                                          
TTTTTTAC                                         G    -AAAATA       A     ------   -      GCAAAAAAAACATAAACACTACCTACACACT  CACCAGGCATTTAGCATGTCTAGTTCAATTAGGCATTCCAACTATGCTTGGTTGAACTAAGCATTCAGAAAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1820145

ACATTTTTTGGGTGTTGCTAGGTGCACCTAGCATTATTGCTGGTGCACCAGCACTTAAGGTGAAATGACGAAAATACCCTTGATTCGTAAGCCATTTAAGTTGATCTATAAAAGCCTTACAGATCAAGTTGATTCGTAAGACTTCTACGGATCAAGTTGATCCGTATTGTTCCGTAAAAGACTTACGAATCAAGTTGGTTCGTATCAACCTTACGGATTAACTTGATCTGTACGATTTACGGACCACCCTCACACATCCATCACAAATACAAAAAAAACGTACGGACAATTTTGATATTTTAATAAAATGCTGGGTGCACCAGCAATAATGCTGGGTGCACCTAGCAACACCCACATTTTTT

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