SE1820148

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10476
  • Glycine max
  • SE1820148
  • Mutator
  • M6
  • Gm12:19476753-19477242
  • AAATATATT
  • AATATATTGGCAAAATTGCATTTTTGGTCCCCCAGTTTATCTCCAGTTTTGGATTTGGTCCCCCAGTAATTTAATTCAGGAATTTGGTCCTCCTATTTTGTAAAATCGTGCAATGTTGGTCCCCCAGACCACAATTGGAAGTTGACCGTTAACAAGTGATGTTGACTGCCACATGTCATGTTCTTATTGGATGATGATTGTCACGTGTCATGTTATGATTGGTCAAT

Secondary structure and sequence

TSD    TIR
5'



3'
A        -          C TT                     C                   C              G                  T                             A           A                               CA                                         A       ---     GAAAACAATAATACAT     CT
 AATATATT GGCAAAATTG A  TTTGGTCCCCCAGTTTATCTC AGTTTTGGATTTGGTCCCC AGTAATTTAATTCA GAATTTGGTCCTCCTATT TGTAAAATCGTGCAATGTTGGTCCCCCAG CCACAATTGGA GTTGACCGTTAACAAGTGATGTTGACTGCCA  TGTCATGTTCTTATTGGATGATGATTGTCACGTGTCATGTT TGATTGG   TCAAT                TTCAT  
 |||||||| |||||||||| |  ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||   |||||                |||||  T
 TTATATAA CCGTTTTAAC T  AAACCAGGGGGTCAAATAGAG TCAAAACCTAAACCAGGGG TCATTAAATTAAGT CTTAAACCAGGAGGATAA ACATTTTAGCACGTTACAACCAGGGGGTC GGTGTTAACCT CAACTGGCAATTGTTCACTACAACTGACGGT  ACAGTGTAAGAATAACCTACTATTGACGGTGCGCAGTACAA ACTAACC   AGTTG                AGGTA  
         A          A TT                     A                   A              G                  T                             C           A                               AC                                         G       TAC     ----------------     CT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End