Plant MITE

SE1830150

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10478
Glycine max
SE1830150
hAT
Hat4
Gm17:27032857-27033488
GCTGCAAC
TGCAACTAGGGGTGGGAATAGGTCAGGCCAGACC

Secondary structure and sequence

TSD TIR

5'

3'

GC    A                          A  ------    -- TTGAA    CTAAGCCTAGCCTACGATGAATCTTTGAGGCCTGAGTCTGGCCTATAGCCTATCAAAGACTTTTATTTTGGCTCGGCCTGGCCTTTTTAAAAGCCTGGCCTGACCTAATAGCCTTTTTAAAAGCCTTCTTCACAATAAATATTTAATATTTTATGGAGTAGGAACGTAATAGGAAAGTTAAAAAAAAAGAAAGTCAATCAAAATAATGAGGAATATAAAAGGGCACATGACTCACACCTAAATTGTAATTAAAGTCCTTGATTAT
  TGCA CTAGGGGTGGGAATAGGTCAGGCCAG CC      AGGC  T     AGGC                                                                                                                                                                                                                                                                         
  |||| |||||||||||||||||||||||||| ||      ||||  |     ||||                                                                                                                                                                                                                                                                          
  ACGT GATCCCCACCCTTATTCGGTCTGGTC GG      CCGG  G     CTGG                                                                                                                                                                                                                                                                         
CA    C                          -  ATGTCC    AT -----    ACCGGATGTATTTCAGACCGGACTTGACCAGATAAATTAATTTTCCAATTCAAGTCCGAAAAAATTTTCGGATAATTTAATTTATCTGGTCCGAATCCGAATAATTTTTCAGAATATTCGGACTATCCGGCCGGATATATATATATATATATATATATATATATATATATATATATATATATATATAATAAAAAACCTATCTTAATTAAAAAAAAATTTGATAGTCTGAAACTAATGTATAATGACGAGGTATTGAAGATAAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1830150

GCTGCAACTAGGGGTGGGAATAGGTCAGGCCAGACCAGGCTTTGAAAGGCCTAAGCCTAGCCTACGATGAATCTTTGAGGCCTGAGTCTGGCCTATAGCCTATCAAAGACTTTTATTTTGGCTCGGCCTGGCCTTTTTAAAAGCCTGGCCTGACCTAATAGCCTTTTTAAAAGCCTTCTTCACAATAAATATTTAATATTTTATGGAGTAGGAACGTAATAGGAAAGTTAAAAAAAAAGAAAGTCAATCAAAATAATGAGGAATATAAAAGGGCACATGACTCACACCTAAATTGTAATTAAAGTCCTTGATTATAGGAATAGAAGTTATGGAGCAGTAATATGTAATCAAAGTCTGATAGTTTAAAAAAAAATTAATTCTATCCAAAAAATAATATATATATATATATATATATATATATATATATATATATATATATATATATAGGCCGGCCTATCAGGCTTATAAGACTTTTTAATAAGCCTAAGCCTGGTCTATTTAATTTAATAGGCTTTTAAAAAAGCCTGAACTTAACCTTTTAATTAAATAGACCAGTTCAGGCCAGACTTTATGTAGGCCAGGTCGTAGGCCCCTGTAGGCTGGTCTGGCTTATTCCCACCCCTAGCTGCAAC

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